# R language definition file # # Author: Andre Simon # Mail: andre.simon1@gmx.de # Date: 13.04.04 # ------------------------------------------ # This file is a part of highlight, a free source code converter released under the GPL. # # The file is used to describe keywords and special symbols of programming languages. # See README in the highlight directory for details. # # New definition files for future releases of highlight are always appreciated ;) # # ---------- # andre.simon1@gmx.de # http:/www.andre-simon.de/ # # Modified by Yihui XIE # Homepage: http://www.yihui.name/en (English); http://www.yihui.name (Chinese) # # For the process of making this file, please refer to: # http://www.yihui.name/en/read.php/6.htm $DESCRIPTION=R $KEYWORDS(kwa)=if else repeat while function for in next break ifelse switch $KEYWORDS(kwb)=NULL NA Inf NaN TRUE T FALSE F $KEYWORDS(kwc)=acf acf2AR add.scope add1 addmargins aggregate aggregate.data.frame aggregate.default aggregate.ts AIC alias anova anova.glm anova.glmlist anova.lm anova.lmlist anova.mlm anovalist.lm ansari.test aov approx approxfun ar ar.burg ar.mle ar.ols ar.yw arima arima.sim arima0 arima0.diag ARMAacf ARMAtoMA as.dendrogram as.dist as.formula as.hclust as.stepfun as.ts asOneSidedFormula ave bandwidth.kernel bartlett.test binom.test binomial biplot Box.test bw.bcv bw.nrd bw.nrd0 bw.SJ bw.ucv C cancor case.names ccf chisq.test clearNames cmdscale coef coefficients complete.cases confint confint.default constrOptim contr.helmert contr.poly contr.SAS contr.sum contr.treatment contrasts convolve cooks.distance cophenetic cor cor.test cov cov.wt cov2cor covratio cpgram cutree cycle D dbeta dbinom dcauchy dchisq decompose delete.response deltat dendrapply density density.default deriv deriv.default deriv.formula deriv3 deriv3.default deriv3.formula deviance dexp df df.kernel df.residual dfbeta dfbetas dffits dgamma dgeom dhyper diff.ts diffinv dist dlnorm dlogis dmultinom dnbinom dnorm dpois drop.scope drop.terms drop1 dsignrank dt dummy.coef dunif dweibull dwilcox ecdf eff.aovlist effects embed end estVar expand.model.frame extractAIC factanal factor.scope family fft filter fisher.test fitted fitted.values fivenum fligner.test formula frequency friedman.test ftable Gamma gaussian get_all_vars getInitial glm glm.control glm.fit glm.fit.null hasTsp hat hatvalues hatvalues.lm hclust heatmap HoltWinters influence influence.measures integrate interaction.plot inverse.gaussian IQR is.empty.model is.leaf is.mts is.stepfun is.ts is.tskernel isoreg KalmanForecast KalmanLike KalmanRun KalmanSmooth kernapply kernel kmeans knots kruskal.test ks.test ksmooth lag lag.plot line lines.ts lm lm.fit lm.fit.null lm.influence lm.wfit lm.wfit.null loadings loess loess.control loess.smooth logLik loglin lowess ls.diag ls.print lsfit mad mahalanobis make.link makeARIMA makepredictcall manova mantelhaen.test mauchley.test mauchly.test mcnemar.test median median.default medpolish model.extract model.frame model.frame.aovlist model.frame.default model.frame.glm model.frame.lm model.matrix model.matrix.default model.matrix.lm model.offset model.response model.tables model.weights monthplot mood.test mvfft na.action na.contiguous na.exclude na.fail na.omit na.pass napredict naprint naresid nextn nlm nlminb nls nls.control NLSstAsymptotic NLSstClosestX NLSstLfAsymptote NLSstRtAsymptote numericDeriv offset oneway.test optim optimise optimize order.dendrogram p.adjust p.adjust.methods pacf pairwise.prop.test pairwise.t.test pairwise.table pairwise.wilcox.test pbeta pbinom pbirthday pcauchy pchisq pexp pf pgamma pgeom phyper plclust plnorm plogis plot.density plot.ecdf plot.lm plot.mlm plot.spec plot.spec.coherency plot.spec.phase plot.stepfun plot.ts plot.TukeyHSD pnbinom pnorm poisson poly polym power power.anova.test power.prop.test power.t.test PP.test ppoints ppois ppr prcomp predict predict.glm predict.lm predict.mlm predict.poly preplot princomp print.anova print.coefmat print.density print.family print.formula print.ftable print.glm print.infl print.integrate print.lm print.logLik print.terms print.ts printCoefmat profile proj promax prop.test prop.trend.test psignrank pt ptukey punif pweibull pwilcox qbeta qbinom qbirthday qcauchy qchisq qexp qf qgamma qgeom qhyper qlnorm qlogis qnbinom qnorm qpois qqline qqnorm qqnorm.default qqplot qsignrank qt qtukey quade.test quantile quantile.default quasi quasibinomial quasipoisson qunif qweibull qwilcox r2dtable rbeta rbinom rcauchy rchisq read.ftable rect.hclust reformulate relevel reorder replications reshape reshapeLong reshapeWide resid residuals residuals.default residuals.glm residuals.lm rexp rf rgamma rgeom rhyper rlnorm rlogis rmultinom rnbinom rnorm rpois rsignrank rstandard rstandard.glm rstandard.lm rstudent rstudent.glm rstudent.lm rt runif runmed rweibull rwilcox scatter.smooth screeplot sd se.contrast selfStart setNames shapiro.test simulate smooth smooth.spline smoothEnds sortedXyData spec.ar spec.pgram spec.taper spectrum spline splinefun SSasymp SSasympOff SSasympOrig SSbiexp SSD SSfol SSfpl SSgompertz SSlogis SSmicmen SSweibull start stat.anova step stepfun stl StructTS summary.aov summary.aovlist summary.glm summary.infl summary.lm summary.manova summary.mlm summary.stepfun supsmu symnum t.test termplot terms terms.aovlist terms.default terms.formula terms.terms time toeplitz ts ts.intersect ts.plot ts.union tsdiag tsp tsSmooth TukeyHSD TukeyHSD.aov uniroot update update.default update.formula var var.test variable.names varimax vcov weighted.mean weighted.residuals weights wilcox.test window write.ftable xtabs abline arrows assocplot axis Axis axis.Date axis.POSIXct axTicks barplot barplot.default box boxplot boxplot.default bxp cdplot close.screen co.intervals contour contour.default coplot curve dotchart erase.screen filled.contour fourfoldplot frame grid hist hist.default identify image image.default layout layout.show lcm legend lines lines.default locator matlines matplot matpoints mosaicplot mtext pairs pairs.default panel.smooth par persp pie piechart plot plot.default plot.design plot.new plot.window plot.xy points points.default polygon rect rug screen segments spineplot split.screen stars stem strheight stripchart strwidth sunflowerplot symbols text text.default title xinch xyinch yinch as.graphicsAnnot bitmap bmp boxplot.stats bringToTop check.options chull CIDFont cm cm.colors col2rgb colorConverter colorRamp colorRampPalette colors colorspaces colours contourLines convertColor dev.control dev.copy dev.copy2eps dev.cur dev.interactive dev.list dev.next dev.off dev.prev dev.print dev.set dev2bitmap embedFonts extendrange getGraphicsEvent graphics.off gray gray.colors grey grey.colors hcl heat.colors Hershey hsv jpeg make.rgb n2mfrow nclass.FD nclass.scott nclass.Sturges palette pdf pdfFonts pictex png postscript postscriptFont postscriptFonts ps.options rainbow recordGraphics recordPlot replayPlot rgb rgb2hsv savePlot terrain.colors topo.colors trans3d Type1Font win.graph win.metafile win.print windows windowsFont windowsFonts x11 X11 xfig xy.coords xyz.coords alarm apropos argsAnywhere as.person as.personList as.roman assignInNamespace available.packages browseEnv browseURL bug.report capture.output checkCRAN choose.dir choose.files chooseCRANmirror citation citEntry citFooter citHeader close.socket combn compareVersion contrib.url count.fields CRAN.packages data data.entry dataentry de de.ncols de.restore de.setup debugger demo DLL.version download.file download.packages dump.frames edit emacs example file.edit file_test Filters find fix fixInNamespace fixup.libraries.URLs fixup.package.URLs flush.console formatOL formatUL getAnywhere getClipboardFormats getFromNamespace getIdentification getS3method getWindowsHandle getWindowTitle glob2rx head head.matrix help help.search help.start history index.search install.packages installed.packages limitedLabels link.html.help loadhistory loadRconsole localeToCharset ls.str lsf.str make.packages.html make.search.html make.socket makeRweaveLatexCodeRunner memory.limit memory.size menu methods mirror2html modifyList new.packages normalizePath object.size old.packages package.contents package.skeleton packageDescription packageStatus page person personList pico prompt promptData promptPackage read.csv read.csv2 read.delim read.delim2 read.DIF read.fortran read.fwf read.socket read.table readCitationFile readClipboard readNEWS recover remove.packages Rprof Rprofmem RShowDoc RSiteSearch Rtangle RtangleSetup RtangleWritedoc RweaveChunkPrefix RweaveEvalWithOpt RweaveLatex RweaveLatexFinish RweaveLatexOptions RweaveLatexSetup RweaveLatexWritedoc RweaveTryStop savehistory select.list sessionInfo setRepositories setStatusBar setWindowTitle shortPathName stack Stangle str strOptions summaryRprof Sweave SweaveHooks SweaveSyntaxLatex SweaveSyntaxNoweb SweaveSyntConv tail tail.matrix timestamp toBibtex toLatex type.convert unstack update.packages update.packageStatus upgrade url.show URLdecode URLencode vi View vignette win.version winDialog winDialogString winMenuAdd winMenuAddItem winMenuDel winMenuDelItem winMenuItems winMenuNames withVisible write.csv write.csv2 write.socket write.table writeClipboard wsbrowser xedit xemacs zip.file.extract zip.unpack ability.cov airmiles AirPassengers airquality anscombe attenu attitude austres beaver1 beaver2 BJsales BJsales.lead BOD cars ChickWeight chickwts co2 CO2 crimtab discoveries DNase esoph euro euro.cross eurodist EuStockMarkets faithful fdeaths Formaldehyde freeny freeny.x freeny.y HairEyeColor Harman23.cor Harman74.cor Indometh infert InsectSprays iris iris3 islands JohnsonJohnson LakeHuron ldeaths lh LifeCycleSavings Loblolly longley lynx mdeaths morley mtcars nhtemp Nile nottem Orange OrchardSprays PlantGrowth precip presidents pressure Puromycin quakes randu rivers rock Seatbelts sleep stack.loss stack.x stackloss state.abb state.area state.center state.division state.name state.region state.x77 sunspot.month sunspot.year sunspots swiss Theoph Titanic ToothGrowth treering trees UCBAdmissions UKDriverDeaths UKgas USAccDeaths USArrests USJudgeRatings USPersonalExpenditure uspop VADeaths volcano warpbreaks women WorldPhones WWWusage addNextMethod allGenerics allNames Arith as asMethodDefinition assignClassDef assignMethodsMetaData balanceMethodsList cacheGenericsMetaData cacheMetaData cacheMethod callGeneric callNextMethod canCoerce cbind2 checkSlotAssignment classMetaName coerce Compare completeClassDefinition completeExtends completeSubclasses Complex conformMethod defaultDumpName defaultPrototype doPrimitiveMethod dumpMethod dumpMethods el elNamed empty.dump emptyMethodsList existsFunction existsMethod extends finalDefaultMethod findClass findFunction findMethod findUnique fixPre1.8 formalArgs functionBody generic.skeleton getAccess getAllMethods getAllSuperClasses getClass getClassDef getClasses getClassName getClassPackage getDataPart getExtends getFunction getGeneric getGenerics getGroup getGroupMembers getMethod getMethods getMethodsForDispatch getMethodsMetaData getPackageName getProperties getPrototype getSlots getSubclasses getValidity getVirtual hasArg hasMethod initialize insertMethod is isClass isClassDef isClassUnion isGeneric isGrammarSymbol isGroup isSealedClass isSealedMethod isVirtualClass languageEl linearizeMlist listFromMethods listFromMlist loadMethod Logic makeClassRepresentation makeExtends makeGeneric makeMethodsList makePrototypeFromClassDef makeStandardGeneric matchSignature Math Math2 mergeMethods metaNameUndo method.skeleton MethodAddCoerce methodSignatureMatrix MethodsList MethodsListSelect methodsPackageMetaName missingArg mlistMetaName new newBasic newClassRepresentation newEmptyObject Ops packageSlot possibleExtends promptClass promptMethods prototype Quote rbind2 reconcilePropertiesAndPrototype rematchDefinition removeClass removeGeneric removeMethod removeMethods removeMethodsObject representation requireMethods resetClass resetGeneric sealClass seemsS4Object selectMethod sessionData setAs setClass setClassUnion setDataPart setGeneric setGroupGeneric setIs setMethod setOldClass setPackageName setPrimitiveMethods setReplaceMethod setValidity show showClass showDefault showExtends showMethods showMlist signature SignatureMethod sigToEnv slot slotNames substituteDirect substituteFunctionArgs Summary superClassDepth testVirtual traceOff traceOn tryNew trySilent unRematchDefinition validObject validSlotNames abbreviate abs acos acosh addTaskCallback agrep alist all all.equal all.equal.character all.equal.default all.equal.factor all.equal.formula all.equal.language all.equal.list all.equal.numeric all.equal.POSIXct all.equal.raw all.names all.vars any aperm append apply Arg args array as.array as.call as.character as.character.condition as.character.Date as.character.default as.character.error as.character.factor as.character.hexmode as.character.octmode as.character.package_version as.character.POSIXt as.character.srcref as.complex as.complex.default as.data.frame as.data.frame.array as.data.frame.AsIs as.data.frame.character as.data.frame.complex as.data.frame.data.frame as.data.frame.Date as.data.frame.default as.data.frame.difftime as.data.frame.factor as.data.frame.integer as.data.frame.list as.data.frame.logical as.data.frame.matrix as.data.frame.model.matrix as.data.frame.numeric as.data.frame.ordered as.data.frame.package_version as.data.frame.POSIXct as.data.frame.POSIXlt as.data.frame.raw as.data.frame.table as.data.frame.ts as.data.frame.vector as.Date as.Date.character as.Date.date as.Date.dates as.Date.default as.Date.factor as.Date.POSIXct as.Date.POSIXlt as.difftime as.double as.double.default as.double.difftime as.environment as.expression as.expression.default as.factor as.function as.function.default as.integer as.integer.default as.list as.list.data.frame as.list.default as.list.environment as.list.factor as.logical as.logical.default as.matrix as.matrix.data.frame as.matrix.default as.matrix.noquote as.matrix.POSIXlt as.name as.null as.null.default as.numeric as.numeric.POSIXlt as.ordered as.package_version as.pairlist as.POSIXct as.POSIXct.date as.POSIXct.Date as.POSIXct.dates as.POSIXct.default as.POSIXct.POSIXlt as.POSIXlt as.qr as.raw as.real as.single as.single.default as.symbol as.table as.table.default as.vector as.vector.factor asin asinh asNamespace asS4 assign atan atan2 atanh attach attachNamespace attr attr.all.equal attributes autoload autoloader backsolve baseenv basename besselI besselJ besselK besselY beta bindingIsActive bindingIsLocked bindtextdomain body bquote browser builtins by by.data.frame by.default bzfile c c.Date c.noquote c.package_version c.POSIXct c.POSIXlt call callCC capabilities casefold cat category cbind cbind.data.frame ceiling char.expand character charmatch charToRaw chartr check_tzones chol chol2inv choose class close close.connection close.srcfile closeAllConnections codes codes.factor codes.ordered col colMeans colnames colSums commandArgs comment complex computeRestarts conditionCall conditionCall.condition conditionMessage conditionMessage.condition conflicts Conj contributors cos cosh crossprod Cstack_info cummax cummin cumprod cumsum cut cut.Date cut.default cut.POSIXt data.class data.frame data.matrix date debug default.stringsAsFactors delay delayedAssign deparse det detach determinant determinant.matrix dget diag diff diff.Date diff.default diff.POSIXt difftime digamma dim dim.data.frame dimnames dimnames.data.frame dir dir.create dirname do.call double dput dQuote drop dump duplicated duplicated.array duplicated.data.frame duplicated.default duplicated.matrix duplicated.POSIXlt dyn.load dyn.unload eapply eigen emptyenv encodeString Encoding env.profile environment environmentIsLocked environmentName eval eval.parent evalq exists exp expand.grid expm1 expression factor factorial fifo file file.access file.append file.choose file.copy file.create file.exists file.info file.path file.remove file.rename file.show file.symlink findInterval findPackageEnv findRestart floor flush flush.connection force formals format format.AsIs format.char format.data.frame format.Date format.default format.difftime format.factor format.hexmode format.info format.octmode format.POSIXct format.POSIXlt format.pval formatC formatDL forwardsolve gamma gammaCody gc gc.time gcinfo gctorture get getAllConnections getCallingDLL getCallingDLLe getCConverterDescriptions getCConverterStatus getConnection getDLLRegisteredRoutines getDLLRegisteredRoutines.character getDLLRegisteredRoutines.DLLInfo getenv geterrmessage getExportedValue getHook getLoadedDLLs getNamespace getNamespaceExports getNamespaceImports getNamespaceInfo getNamespaceName getNamespaceUsers getNamespaceVersion getNativeSymbolInfo getNumCConverters getOption getRversion getSrcLines getTaskCallbackNames gettext gettextf getwd gl globalenv gregexpr grep gsub gzcon gzfile httpclient I iconv iconvlist identical Im importIntoEnv inherits integer interaction interactive intersect intToBits intToUtf8 inverse.rle invisible invokeRestart invokeRestartInteractively is.array is.atomic is.call is.character is.complex is.data.frame is.double is.element is.environment is.expression is.factor is.finite is.function is.infinite is.integer is.language is.list is.loaded is.logical is.matrix is.na is.na.data.frame is.na.POSIXlt is.name is.nan is.null is.numeric is.object is.ordered is.package_version is.pairlist is.primitive is.qr is.R is.raw is.real is.recursive is.single is.symbol is.table is.unsorted is.vector isBaseNamespace isIncomplete isNamespace ISOdate ISOdatetime isOpen isRestart isS4 isSeekable isSymmetric isSymmetric.matrix isTRUE jitter julian julian.Date julian.POSIXt kappa kappa.default kappa.lm kappa.qr kappa.tri kronecker l10n_info La.chol La.chol2inv La.eigen La.svd labels labels.default lapply last.warning lazyLoad lbeta lchoose length letters LETTERS levels lfactorial lgamma library library.dynam library.dynam.unload licence license list list.files load loadedNamespaces loadingNamespaceInfo loadNamespace loadURL local lockBinding lockEnvironment log log10 log1p log2 logb logical lower.tri ls machine Machine make.names make.unique makeActiveBinding manglePackageName mapply margin.table mat.or.vec match match.arg match.call match.fun Math.data.frame Math.Date Math.difftime Math.factor Math.POSIXt matrix max max.col mean mean.data.frame mean.Date mean.default mean.difftime mean.POSIXct mean.POSIXlt mem.limits memory.profile merge merge.data.frame merge.default message mget min missing Mod mode month.abb month.name months months.Date months.POSIXt names namespaceExport namespaceImport namespaceImportClasses namespaceImportFrom namespaceImportMethods nargs nchar ncol NCOL new.env NextMethod ngettext nlevels noquote nrow NROW numeric objects oldClass on.exit open open.connection open.srcfile open.srcfilecopy Ops.data.frame Ops.Date Ops.difftime Ops.factor Ops.ordered Ops.package_version Ops.POSIXt options order ordered outer package.description package_version packageEvent packageHasNamespace packageStartupMessage packBits pairlist parent.env parent.frame parse parse.dcf parseNamespaceFile paste path.expand pentagamma pi pipe Platform pmatch pmax pmax.int pmin pmin.int polyroot pos.to.env pretty prettyNum print print.AsIs print.atomic print.by print.condition print.connection print.data.frame print.Date print.default print.difftime print.DLLInfo print.DLLInfoList print.DLLRegisteredRoutines print.factor print.hexmode print.libraryIQR print.listof print.NativeRoutineList print.noquote print.octmode print.package_version print.packageInfo print.POSIXct print.POSIXlt print.proc_time print.restart print.rle print.simple.list print.srcfile print.srcref print.summary.table print.table print.warnings printNoClass prmatrix proc.time prod prop.table provide psigamma pushBack pushBackLength q qr qr.coef qr.fitted qr.Q qr.qty qr.qy qr.R qr.resid qr.solve qr.X quarters quarters.Date quarters.POSIXt quit quote R.home R.version R.Version R.version.string range range.default rank rapply raw rawShift rawToBits rawToChar rbind rbind.data.frame Re read.dcf read.table.url readBin readChar readline readLines real Recall reg.finalizer regexpr registerS3method registerS3methods remove removeCConverter removeTaskCallback rep rep.Date rep.factor rep.int rep.POSIXct rep.POSIXlt replace replicate require restart restartDescription restartFormals retracemem return rev rev.default rle rm RNGkind RNGversion round round.Date round.difftime round.POSIXt row row.names row.names.data.frame row.names.default rowMeans rownames rowsum rowsum.data.frame rowsum.default rowSums sample sapply save save.image saveNamespaceImage scale scale.default scan scan.url search searchpaths seek seek.connection seq seq.Date seq.default seq.int seq.POSIXt seq_along seq_len sequence serialize set.seed setCConverterStatus setdiff setequal setHook setNamespaceInfo setwd shell shell.exec showConnections shQuote sign signalCondition signif simpleCondition simpleError simpleMessage simpleWarning sin single sinh sink sink.number slice.index socketConnection socketSelect solve solve.default solve.qr sort sort.default sort.int sort.list sort.POSIXlt source source.url split split.data.frame split.default sprintf sqrt sQuote srcfile srcfilecopy srcref standardGeneric stderr stdin stdout stop stopifnot storage.mode strftime strptime strsplit strtrim structure strwrap sub subset subset.data.frame subset.default subset.matrix substitute substr substring sum summary summary.connection summary.data.frame Summary.data.frame summary.Date Summary.Date summary.default Summary.difftime summary.factor Summary.factor summary.matrix Summary.package_version summary.POSIXct Summary.POSIXct summary.POSIXlt Summary.POSIXlt summary.table suppressMessages suppressPackageStartupMessages suppressWarnings svd sweep symbol.C symbol.For sys.call sys.calls Sys.Date sys.frame sys.frames sys.function Sys.getenv Sys.getlocale Sys.getpid Sys.glob Sys.info sys.load.image Sys.localeconv sys.nframe sys.on.exit sys.parent sys.parents Sys.putenv sys.save.image Sys.setenv Sys.setlocale Sys.sleep sys.source sys.status Sys.time Sys.timezone Sys.unsetenv system system.file system.time t t.data.frame t.default table tabulate tan tanh tapply taskCallbackManager tcrossprod tempdir tempfile testPlatformEquivalence tetragamma textConnection textConnectionValue tolower topenv toString toString.default toupper trace traceback tracemem tracingState transform transform.data.frame transform.default trigamma trunc trunc.Date trunc.POSIXt truncate truncate.connection try tryCatch typeof unclass undebug union unique unique.array unique.data.frame unique.default unique.matrix unique.POSIXlt units units.difftime unix unix.time unlink unlist unloadNamespace unlockBinding unname unserialize unsplit untrace untracemem unz upper.tri url UseMethod utf8ToInt vector Vectorize version Version warning warnings weekdays weekdays.Date weekdays.POSIXt which which.max which.min with with.default withCallingHandlers withRestarts write write.dcf write.table0 writeBin writeChar writeLines xor xpdrows.data.frame zapsmall lset xtable $IDENTIFIER=regex([a-zA-Z_][\w\.]*) $STRINGDELIMITERS=" ' $SL_COMMENT=# $ESCCHAR=regex(\\\d{3}|\\x\p{XDigit}{2}|\\[ntvbrfa\\\?'"]) $SYMBOLS= ( ) [ ] { } , ; : & | < > ! = / * % + - ~